Ocean monitoring

Hailed by The New York Times as the greatest revolution in ocean observing, one organisation has sent out 4,000 robots to traverse up and down the ocean’s upper 2 km, measuring its heat content and temperature. This moniker is well earned, as the ocean remains a mystery despite the important role it plays in food production, climate regulation and tourism.

Having sent out their first robots in 2008, equipped with nitrogen and oxygen sensors, the team at Monterey Bay Aquarium Research Institute measures the ocean’s basic metabolism. “If you feel unwell and go to the hospital, the doctor does not immediately throw you in the MRI scanner. They take basic vital signs first, and that’s what we’re doing with the ocean,” explained Ken Johnson, senior scientist at the Monterey Bay Aquarium Research Institute. Using gas sensors, they measure oxygen and carbon dioxide, which allows them to measure the metabolism, growth and death of plants and animals in the ocean.

As in humans, monitoring the ocean’s vital signs alerts scientists to when processes become disordered, which can lead to devastating impacts. For instance, higher temperatures strip the ocean of oxygen, leading to changes in migratory patterns and a decline in species diversity, making the ecosystem less resilient. Oxygen-poor environments are more attractive to greenhouse gas-producing bacteria, compounding the problem of rising temperatures.

Ocean alert

Higher temperatures strip the ocean of oxygen, leading to changes in migratory patterns and a decline in species diversity, making the ecosystem less resilient.

Plant growth is at risk as ocean temperatures rise. Plants are reliant on nutrients from the deepest waters of the ocean, which are transported upwards. As the upper ocean gets warmer, it becomes harder for cold water to be lifted up and the flow of nutrients changes. “Our sensors are our version of an MRI to see the problems in the ocean,” said Mr Johnson.

Historically, vast areas of the ocean could never be sampled, while others were sampled every decade. “If you are really interested in ocean health, once every ten years is not enough. Oceanographers tend to sample only in summer, so the metabolism of the ocean is heavily biased to summer; no one wants to go in winter,” Mr Johnson said. The ability to sample regularly throughout the year now means that oceanographers can measure how the rate of ocean acidification varies based on location.

Our sensors are our version of an MRI to see the problems in the ocean. If you are really interested in ocean health, once every 10 years is not enough.

In the 1990s, satellite remote sensing technologies became integral for monitoring oceanographic changes. Now, technologies include AI-based systems, sail drones and wave gliders. Mr Johnson’s robots use profiling floats that operate by changing their buoyancy, allowing them to descend to 1 km, drifting for five to ten days, and then diving as deep as 2 km before returning to the surface.

Extreme marine temperatures, known as marine heatwaves, are now occurring in different areas of the ocean. These cause harm to fish, seabirds, coral and coastal ecosystems. Marine heatwaves doubled in frequency between 1982 and 2016. And in August 2023 the average daily global sea surface temperature surpassed the 2016 record, peaking at 20.96°C.

Rising marine heatwaves

Marine heatwaves doubled in frequency between 1982 and 2016, and in August 2023, the average daily global sea surface temperature surpassed the 2016 record.

This picture contrasts with the fact that sea ice in Antarctica reached record highs in 2013 and 2014, followed by a sharp decline from 2016 to 2020. “The ocean is more variable than people realise, the signals of health can go up and down, the annual cycles change,” explained Mr Johnson. “We don’t have the data to say how variable it is. We have almost a 30-year record of flying satellites that measure the colour of the ocean, which is chlorophyll, but that’s just on the surface. Most chlorophyll is deep down where the nutrients are; we don’t see that on satellite, so we don’t really know what is happening.”

Ocean colour sensors, measuring how the sunlight reflects off the water, were first launched in 1978, but there is a gap in the records from 1986 to 1996. After that point, Japan and the US launched sensors that have been operational since. They function best in the open ocean; coastal waters present a more complex picture due to suspended particles from river run-off and terrestrial activities.

Reversing ocean acidification

The ocean soaks up 30-40% of all gases produced by human activities, making it the world’s main carbon dioxide sink. The ocean’s effectiveness at removing greenhouse gases has prompted hope for slowing climate change by accelerating the natural process of ocean carbon dioxide uptake.

How carbon dioxide (CO₂) affects the ocean
1

As the amount of CO₂ in the air increases from human activities, the excess CO₂ enters the ocean. This changes the chemistry of seawater.

2

When CO₂ enters the oceans, it dissolves and reacts with the water. This chemical reaction creates carbonic acid which lowers the pH of the ocean; making it more acidic, and reduces the availability of shell-building materials. It can also cause a range of biological effects such as reduced growth and reproduction, and changes to metabolism.

3

The effects of ocean acidification of tiny plants and animals (phytoplankton and zooplankton) that are at the base of the marine food chain can limit the food available to larger organisms.

4

As a result, ocean acidification is likely to affect coastal communities which depend on marine resources for their livelihood.

Source: Fisheries and Oceans Canada

Research teams now are exploring methods for removing carbon dioxide from the ocean and reversing acidification. Currently, this is done by converting dissolved bicarbonate to molecules of carbon dioxide, which are then removed under vacuum. This conversion involves applying a voltage across a stack of membranes, a process that temporarily acidifies the water. A team of MIT researchers has devised a membrane-free method, which reverses this acidification, making the water alkaline before it is released back into the ocean. It is hoped that this process could slowly start to reduce ocean acidification locally. The carbon dioxide removed can be used as feedstock, although the majority is expected to be placed in underground geologic storage areas.

Earth’s carbon sponge

The ocean soaks up 30-40% of all gases produced by human activities, making it the world’s main carbon dioxide sink.

Keeping records can be helpful for reshaping coastal ecosystems. “The coastal ocean has recovered in many places, this is generally true for systems that we pay attention to as humans: when we are fully aware and we see things, we fix them, but if we don’t pay attention to it, we not to even know there is a problem or make the effort to fix it,” said Mr Johnson.

An example is seen in Abu Dhabi, where they are safeguarding the world’s second-largest dugong population by restoring several thousand hectares of coastal areas. They realised that dugongs, the dolphin-like creatures that may have been mistaken for mermaids in ancient times, thrive in conditions that also allow corals, turtles and several other species to thrive.

Similarly, the Indian government led an initiative to invest in waste management, water treatment and engaging communities in conserving the ecosystem along the banks of the Ganges River. Over 370 km of riverbank has been restored to date with US$4.25bn invested so far.

Country-wide measures
India

Over 370 km of riverbank has been restored to date with US$4.25bn invested so far.

Abu Dhabi

Safeguarding the world’s second-largest dugong population by restoring several thousand hectares of coastal areas.

The data collected by Mr Johnson’s sensors have several applications, including fisheries management and oxygen distribution patterns. But there is a new field of environmental DNA (eDNA), which could have far-reaching positive implications. “Everyone is sloughing off DNA and that’s the field that’s going forward. At the moment it tells the health of a system, but it can’t yet say what the system is,” he explained. eDNA technology is also helpful for detecting new species, as it measures the cellular material shed by organisms.

Other advances are being made with acoustics on sensors, although this can be a national security problem for some nations due to Navy restrictions. Nevertheless, this is an exciting time for ocean monitoring technology, as more sophisticated and expensive solutions are being deployed.

AI-powered estimates

Fish play an important role in global food security and nutrition, and sustainable systems must be implemented to include dealing with overfishing and unequal access to resources. Aquatic food production is forecast to increase by 15% by 2030, but before this increase can happen, the current state of fish stocks needs to be understood. Data on global fish stocks are, however, incomplete, especially in regions like Asia, Africa and Latin America.

15% increase by 2030

Aquatic food production is forecast to increase by 15% by 2030, but before this increase can happen, the current state of fish stocks needs to be understood.

Source: United Nations Food and Agriculture Organisation

In order to determine sustainability, certain benchmarks are assessed, such as unfished biomass and the amount that would be a sustainable fish biomass. In a context of limited data, this creates a situation whereby a big belt of areas across the tropics, where a lot of people rely on food from coral reefs, do not have good estimates on the state of their fisheries.

Fish stock assessments are carried out to manage fisheries, such as setting catch limits that are sustainable for specific fish populations. One way of doing this is the ABC method, which looks at the abundance of fish, biological factors such as age and population growth rate, and catch data. However, this method is expensive and labour intensive. The cost is a barrier for less developed countries, making it mostly restricted to wealthy countries.

Another method, which has the most abundant data, involves measuring the catch on a beach or landing site. Trying to estimate the global status of fisheries is therefore problematic, because the best data come from that gathered empirically by research organisations in wealthier countries.

Nobody had ever realised that you could predict fish populations from reflections off the surface of the sea. This is extremely powerful.

- Dr Tim McClanahan, director of Marine Science at Wildlife Conservation Society

Now, a new AI method is allowing researchers to estimate coastal fish stocks and will hopefully allow countries that have poor fisheries data to determine the sustainability of their stocks. The approach, spearheaded by Dr Tim McClanahan, director of Marine Science at Wildlife Conservation Society, estimated fish stocks with 85% accuracy in a pilot region in the Western Indian Ocean.

Dr McClanahan carried out the work over a number of years, and began by counting fish in protected areas where there was no fishing, allowing him to estimate recovery rates. He used over 1,000 transects to count fish stocks and collected satellite data such as water temperature, distance from shore, ocean productivity, depth of the water and existing fisheries management.

He trained the model with 70% of the information and tested it against the remaining 30%. “When we did that, we came to the shocking recognition that it had 85% predictive ability,” said Dr McClanahan. “Nobody had probably ever realised that you could predict fish populations from basically reflections off the surface of the sea, knowing the distance and the management system it’s in. This is extremely powerful,” he carried on enthusiastically.

$50 million to $150 million

Amount recouped after using AI tool in pilot study

The beauty of the method is that anyone, anywhere in the world, can use the tool to determine the health of fish stocks, the time they need for recovery, and even how much money is lost by fisheries mismanagement. In the pilot study, the amount recouped after using the tool was US$50m-150m annually. Dr McClanahan expects that the method will chart the way for more applications of AI in fisheries research and is already using his model to predict changes in global climate change.

Tracking ocean hypoxia by satellite

Normally, the level of dissolved oxygen in the ocean ranges from 7-8 mg/L. If the concentration falls below 4 mg/L, fish and other species will migrate out of the area or avoid it. Areas of low oxygen are known as dead zones and areas where oxygen levels are at or below 2 mg/L are referred to as hypoxic.

“There are multiple events that lead to ocean hypoxia, the most common is excessive nutrient flow from land,” explained Dr Yingjie Li, human-environment scientist at Michigan State University, who monitors global coastal dead zones. “Another reason is definitely climate change; as the temperature increases, oxygen will escape from the water. There are many other reasons but these two are the most important ones,” he continued. The growing number and size of these hypoxic zones are an increasing threat to the health of the marine ecosystem, which in turn affects human well-being.

There are multiple events that lead to ocean hypoxia, the most common is excessive nutrient flow from land. Another reason is definitely climate change; as the temperature increases, oxygen will escape from the water.

- Dr Yingjie Li, human-environment scientist at Michigan State University

Dr Li uses satellite imagery to measure oxygen levels in the ocean, a more convenient method than the common and labour-intensive practice of taking water samples and testing oxygen levels in the lab. Their images of algal bloom on the ocean surface, which changes based on oxygen content, can be taken daily with high temporal and spatial resolution. Images of algal changes can then be used to build a map of hypoxic zones, which can be of use to policymakers, allowing for targeted actions. Satellite image data were obtained from NASA’s Earth Observing System, which is freely available to scientists.

To map hypoxic zones, the machine learning models needed to be trained. “Satellite imagery is great, but ground-level data is also critical. We collaborated with marine scientists from Louisiana State University who collected several water samples. We also used available water samples from NOAA and these samples were all critical for training our machine learning models,” explained Dr Li.

Now, the team plans to release their tool as a platform, allowing other scientists to use a similar approach in other regions. They expect it to be of use to more than just policymakers. “This has great implications globally,” explained Jianguo Liu, also from Michigan State University. “It can inform farmers about the fertilisers they use and food they produce.

Fertilisers may come from places far away, then farmers use them to produce food and extra fertiliser makes its way to the ocean. It’s not just the farmers responsible for the products, we are all responsible. Our tool will play a hugely important role to inform the public and policymakers to translate knowledge into action,” he said optimistically.

Nature-based solutions

In the fight against climate change, experts believe that reducing emissions alone is not enough, and we now need to actively sequester carbon dioxide to effectively reach negative carbon emissions. The result is that carbon dioxide removal technologies have become a burgeoning industry, which needs to reach US$1trn annually to be effective.

One way to sequester carbon dioxide from the atmosphere is through biological processes; with photosynthesis, plants absorb carbon dioxide and convert it to glucose, releasing oxygen back into the air. In this way, they capture carbon dioxide and store it organically.

There has been a reliance on terrestrial ecosystems such as forests for carbon storage, but coastal ecosystems such as mangrove forests, seagrass meadows and kelp forests also store carbon. Kelp or seaweed may be one of the answers, as they are believed to sequester nearly 200 million tonnes of carbon dioxide annually—equivalent to what New York State emits in a year. By their simple existence, their physiological mechanisms take pollutants out of the atmosphere and use them for food.

Source: Harvard University

“The momentum has been growing for the past six to seven years,” explained Schery Umanzor, an assistant professor in the College of Fisheries and Ocean Sciences at the University of Alaska Fairbanks. “The initial narrative was more about food production as a protein source, then the narrative of biofuels came into play, and nowadays it is towards [the] production of bioplastics and the capacity to remove carbon from the air and take it into the deep ocean.”

I wasn’t expecting to see this much difference in the dynamic of carbon and nitrogen uptake.

- Schery Umanzor, assistant professor, College of Fisheries and Ocean Sciences, University of Alaska Fairbanks

In her three years of working in Alaska alongside kelp farmers, Dr Umanzor realised how much carbon capture varies across geographical regions and species. “I wasn’t expecting to see this much difference in the dynamic of carbon and nitrogen uptake,” she said, referring to an exploratory experiment on the ribbon and sugar kelp species.

These differences may have implications for whether kelp is a sink or source of carbon, as this is likely to vary with time and across species. For this reason, Dr Umanzor is cautious about making claims that kelp will mitigate ocean acidification and anything related to carbon. “It will vary based on when kelp is harvested and by region,” she explained.

Rather than focus on kelp’s impacts on carbon, Dr Umanzor is focusing on its ability to remove nitrogen from the ocean, which it does effectively. Nitrogen is a nutrient that favours marine productivity, but it is not always beneficial for marine life. It is the cause of floating brown seaweed known as Sargassum, which can smother corals and seagrasses. It also releases hydrogen sulphide, which can cause issues for marine ecology and tourism. Kelp farms can offset the large concentrations of nitrogen that contribute to this, despite the concept of carbon renewal being more developed than nitrogen removal.

Amazon makes waves

Amazon intends to fund the world’s first commercial-scale seaweed farm off the coast of the Netherlands to the tune of €1.5 million.

Sailing to success: EU seaweed initiative

The European Maritime Fisheries Fund has provided €2.1 million in funding to a project run by a Scotland-based company aiming to develop a sustainable EU seaweed industry.

Money is pouring into the kelp industry, described as Alaska’s newest gold rush, while Amazon intends to fund the world’s first commercial-scale seaweed farm off the coast of the Netherlands, costing €1.5m. Meanwhile, the European Maritime Fisheries Fund has provided €2.1m in funding to a project run by a Scotland-based company aiming to develop a sustainable EU seaweed industry.

Case study – Azul Bio

A community of trillions of microorganisms, known as the microbiome, lives in our guts. Each person has a unique microbiome, a microbial fingerprint mostly made up of bacteria that can provide clues about their health and disease predispositions. Similarly, there are microbial communities resident in marine environments that contribute to its health.

The microbiome in coral is incredibly complex, according to Dr Benjamin Alva, CEO of Azul Bio, a start-up. “Coral is made up of thousands of members. There are symbiotic algae for providing the food via photosynthesis, there is a huge array of bacteria providing nitrogen cycling and other benefits, and fungi living inside the coral skeleton—coral is a super organism, not a single thing,” he explained. “Some coral are more resilient than others and it’s not purely up to genetics, the leading proposal is that it’s related to the microbiome primarily,” he continued.

Coral is made up of thousands of members. There are symbiotic algae for providing the food via photosynthesis, there is a huge array of bacteria providing nitrogen cycling and other benefits, and fungi living inside the coral skeleton – coral is a super organism, not a single thing.

- Dr Benjamin Alva, CEO of Azul Bio

Azul Bio is developing products to bolster coral microbiomes. It came about in response to the effects of climate change on coral reefs, as they looked for a solution to rapidly increase the resilience of coral without the need for selective breeding—a process that takes several years.

“The 2018 El Niño was an event that caused massive levels of coral bleaching in the Great Barrier Reef and that was a big wake-up call to the world of the severity of climate change on marine habitats. There was already plenty of money going into restoration, but that was completely wiped out in one year. Coral is not resilient to these emerging threats so there has to be a biological solution that works with nature to increase resiliency,” Dr Alva explained.

Source: University of British Columbia

Source: National Oceanic Atmospheric Association

Designing probiotics for the marine microbiome

Using the natural, symbiotic microbes endemic to the specific region, Dr Alva and his team have created probiotics for the Pacific region. Probiotics are bacterial strains that work to improve beneficial microflora while restricting the growth of microbes that cause disease and decay. Probiotic treatments ensure that coral reefs are immune to bleaching even as the ocean warms around them.

Azul Bio will eventually produce and deploy probiotics on a large scale, mainly on wild reefs. Their hope is that coastal hotels, cruise lines and diving associations already putting money into coral restoration will be interested. “We are hoping to sell to both private and public businesses; we are looking at the tourism industry, as those ecological resources are of great importance to them,” Dr Alva explained.

We are hoping to sell to both private and public businesses, we are looking at the tourism industry as those ecological resources are of great importance to them.

- Dr Benjamin Alva, CEO of Azul Bio

The design process is tailored to the specific coral ecosystem. First, they look for corals that are more resilient and experience less bleaching, sample pockets around the coral, and analyse its microbiome by whole genome sequencing. “By getting a copy of their entire genome, we have a reference space of everything that existed. Using bioinformatics, we can determine which genes increase heat resiliency and we can rapidly identify which microbe species give the best benefit,” said Dr Alva.

In creating the probiotics, scientists need to ensure that the microbes they select can live and grow together and that there is no antagonism between them. This is done through high throughput screening, a process traditionally employed during drug discovery to screen the biological activity of small molecules. Genome sequencing and analysing the genomes of complex coral communities have only become possible in recent years, as falling costs mean that even small organisations can leverage such technologies.

By 2050, 90% of all corals will have been eradicated, right now it’s 50%.

- Dr Benjamin Alva, CEO of Azul Bio

This comes at a pivotal time, as corals are the first ecosystem to face imminent extinction from climate change. “By 2050, 90% of all corals will have been eradicated, right now it’s 50%,” said Dr Alva.

Alternative solutions to rescue coral include selective breeding and gene banking. In selective breeding, coral that can survive high temperatures is crossbred with those less heat tolerant. Gene banking programmes are being rolled out in Florida Keys; at-risk coral species are taken from their natural habitat and cultivated in tanks with proper lighting, temperature, chemistry and diet. They will be reared to a size and age that allows them to be successfully reintroduced.

Coral reefs have an estimated annual economic value of US$10trn, alongside their invaluable support for marine species that rely on coral. Venture capital investment has increased over the last ten years, says Dr Alva, as investors look for solutions to save the planet.

Treasures beneath the waves

Coral reefs have an estimated annual economic value of US$10trn, alongside their invaluable support for marine species that rely on coral.

Bio Azul is finalising their probiotic product and planning their first pilot in November and December, a milestone event following their laboratory work. “We are creating a new market and that will always be challenging with new technologies because you have to create a demand that was not there previously. We need users to see that they have a massive need for this, we just need to prove that out at scale,” said Dr Alva.

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